SubtiBank SubtiBank
yfjO [2018-08-01 10:47:04]
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yfjO [2018-08-01 10:47:04]

similar to RNA methyltransferase
locus
BSU08020
pI
9.81
mw
51.97 kDa
protein length
466 aa Sequence Blast
gene length
1398 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.3|rRNA modification and maturation/ based on similarity]

    • Gene

    Coordinates
    873,402 → 874,802

    The protein

    Protein family

  • TRAM domain (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|B97ABE3233A27A7C8273ED9A1E688247DD37FD12|RlmCD]

    • [SW|Cofactors]

  • Fe-S cluster [pubmed|29292548]

    • Expression and Regulation

    Operons

    genes
    [gene|82CDC97D16426016CA7E75240C1A6D0D600F4375|yfjP]-[gene|05392BB2C32B0405799D4F34E5BA55FC936AB943|yfjO]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C276 (yfjO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2274 NBRP B. subtilis, Japan]
  • BKE08020 (Δ[gene|05392BB2C32B0405799D4F34E5BA55FC936AB943|yfjO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACGTTGTTCTCTCCGTTTC, downstream forward: _UP4_TAAAAAGAACATTTCCCAGT
  • BKK08020 (Δ[gene|05392BB2C32B0405799D4F34E5BA55FC936AB943|yfjO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACGTTGTTCTCTCCGTTTC, downstream forward: _UP4_TAAAAAGAACATTTCCCAGT

    • References

  • 21824914